FRESCO
Flexible Alignment with Rectangle Scoring Schemes
Adrian V. Dalca
and
Michael Brudno
FRESCO:
FRESCO package (tgz for now)
Notes:
If trying out a scoring scheme, include the necessary code in src/im/pre_function.c
Usage
: fresco -f mfa_file -m score_matrix_file -s score_matrix_size [ function optional parameter ]
Example
(for the E-value II function): " fresco -f
align1-orig.fa
-m
nucmat.txt
-s 6 -i 1 -v 100 "
(download:
align1-orig.fa
,
nucmat.t
)
Additional Files
FRESCO Appendices
(pdf, 28609 bytes)
